buildFromFile(const std::string &fileName) | gridfire::FileDefinedEngineView | private |
calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y_defined, const double T9, const double rho) const override | gridfire::FileDefinedEngineView | virtual |
calculateRHSAndEnergy(const std::vector< double > &Y_defined, const double T9, const double rho) const override | gridfire::FileDefinedEngineView | virtual |
Config typedef | gridfire::FileDefinedEngineView | private |
constructReactionIndexMap() const | gridfire::FileDefinedEngineView | private |
constructSpeciesIndexMap() const | gridfire::FileDefinedEngineView | private |
FileDefinedEngineView(DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser) | gridfire::FileDefinedEngineView | explicit |
generateJacobianMatrix(const std::vector< double > &Y_defined, const double T9, const double rho) override | gridfire::FileDefinedEngineView | virtual |
generateStoichiometryMatrix() override | gridfire::FileDefinedEngineView | virtual |
getBaseEngine() const override | gridfire::FileDefinedEngineView | virtual |
getJacobianMatrixEntry(const int i_defined, const int j_defined) const override | gridfire::FileDefinedEngineView | virtual |
getNetworkReactions() const override | gridfire::FileDefinedEngineView | virtual |
getNetworkSpecies() const override | gridfire::FileDefinedEngineView | virtual |
getScreeningModel() const override | gridfire::FileDefinedEngineView | virtual |
getSpeciesTimescales(const std::vector< double > &Y_defined, const double T9, const double rho) const override | gridfire::FileDefinedEngineView | virtual |
getStoichiometryMatrixEntry(const int speciesIndex_defined, const int reactionIndex_defined) const override | gridfire::FileDefinedEngineView | virtual |
LogManager typedef | gridfire::FileDefinedEngineView | private |
m_activeReactions | gridfire::FileDefinedEngineView | private |
m_activeSpecies | gridfire::FileDefinedEngineView | private |
m_baseEngine | gridfire::FileDefinedEngineView | private |
m_config | gridfire::FileDefinedEngineView | private |
m_fileName | gridfire::FileDefinedEngineView | private |
m_isStale | gridfire::FileDefinedEngineView | private |
m_logger | gridfire::FileDefinedEngineView | private |
m_parser | gridfire::FileDefinedEngineView | private |
m_reactionIndexMap | gridfire::FileDefinedEngineView | private |
m_speciesIndexMap | gridfire::FileDefinedEngineView | private |
mapFullToView(const std::vector< double > &full) const | gridfire::FileDefinedEngineView | private |
mapViewToFull(const std::vector< double > &defined) const | gridfire::FileDefinedEngineView | private |
mapViewToFullReactionIndex(size_t definedReactionIndex) const | gridfire::FileDefinedEngineView | private |
mapViewToFullSpeciesIndex(size_t definedSpeciesIndex) const | gridfire::FileDefinedEngineView | private |
setNetworkFile(const std::string &fileName) | gridfire::FileDefinedEngineView | |
setScreeningModel(screening::ScreeningType model) override | gridfire::FileDefinedEngineView | virtual |
update(const NetIn &netIn) override | gridfire::FileDefinedEngineView | virtual |
validateNetworkState() const | gridfire::FileDefinedEngineView | private |
~Engine()=default | gridfire::Engine | virtual |
~EngineView()=default | gridfire::EngineView< DynamicEngine > | virtual |